Antigen

Antigen Class

Histone

Antigen

H3K4me3

Cell type

Cell type Class

Embryo

Cell type

Morula

MeSH Description

An early embryo that is a compact mass of about 16 BLASTOMERES. It resembles a cluster of mulberries with two types of cells, outer cells and inner cells. Morula is the stage before BLASTULA in non-mammalian animals or a BLASTOCYST in mammals.

Sample

source_name

mouse embryo

development stage

morula embryo

chip antibody

H3K4me3(Cell signaling Technology, #9727)

overexpression

B6D2F1 (C57BL/6×DBA/2)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

500cells were washed three times in 0.5% BSA-PBS solution. Lysates were clarified from micrococcal nuclease treated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared according to KAPA Hyper Prep Kit for illumina platform (kk8504)

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

21941915

Reads aligned (%)

98.8

Duplicates removed (%)

14.7

Number of peaks

24960 (qval < 1E-05)

mm9

Number of total reads

21941915

Reads aligned (%)

98.7

Duplicates removed (%)

14.8

Number of peaks

24977 (qval < 1E-05)