Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse embryonic stem cells
development stage
mouse embryonic stem cells
chip antibody
H3K27me3(Diagnode, pAb-069-050)
overexpression
mouse ES cell R1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
500cells were washed three times in 0.5% BSA-PBS solution. Lysates were clarified from micrococcal nuclease treated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared according to KAPA Hyper Prep Kit for illumina platform (kk8504)

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
13248897
Reads aligned (%)
97.6
Duplicates removed (%)
6.6
Number of peaks
195 (qval < 1E-05)

mm9

Number of total reads
13248897
Reads aligned (%)
97.5
Duplicates removed (%)
6.6
Number of peaks
185 (qval < 1E-05)

Base call quality data from DBCLS SRA