SRX16111827
GSM6321451: PANC-1 cell line GATA1-NC-IP #2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA1

Cell type

Cell type Class
Pancreas
Cell type
PANC-1
Tissue
Pancreas/Duct
Disease
Epithelioid Carcinoma

Attributes by original data submitter

Sample

source_name
PANC-1
cell line
PANC-1
cell type
human pancreatic cancer cells
chip antibody
GATA1
genotype
WT
treatment
shControl
time
Day 3
geo_loc_name
missing
collection_date
missing

Sequenced DNA Library

library_name
GSM6321451
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
20099349
Reads aligned (%)
97.2
Duplicates removed (%)
24.7
Number of peaks
836 (qval < 1E-05)

hg19

Number of total reads
20099349
Reads aligned (%)
95.8
Duplicates removed (%)
24.3
Number of peaks
343 (qval < 1E-05)

Base call quality data from DBCLS SRA