Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PPARA

Cell type

Cell type Class
Liver
Cell type
LO2
NA
NA

Attributes by original data submitter

Sample

source_name
LO2
cell line
LO2
cell type
immortalized human hepatocyte cell line
chip antibody
PPARa (Abcam, #ab227074)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
35717132
Reads aligned (%)
96.9
Duplicates removed (%)
21.5
Number of peaks
828 (qval < 1E-05)

hg19

Number of total reads
35717132
Reads aligned (%)
96.4
Duplicates removed (%)
22.1
Number of peaks
388 (qval < 1E-05)

Base call quality data from DBCLS SRA