SRX160830
GSM970266: CTCF ChIPSeq Differentiated; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ctcf

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
Differentiated mouse ES cells
cell type
mixed differentiated cell population derived from mouse ES cells after 4.5 days in vitro differentiation induced by retinoic acid
passage
29
strain
E14 [129P2/OlaHsd]
chip antibody
CTCF (Millipore, 07-729, lot DAM1682158)

Sequenced DNA Library

library_name
GSM970266: CTCF_ChIPSeq_Differentiated
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
14429195
Reads aligned (%)
84.3
Duplicates removed (%)
15.8
Number of peaks
2507 (qval < 1E-05)

mm9

Number of total reads
14429195
Reads aligned (%)
84.1
Duplicates removed (%)
16.0
Number of peaks
2510 (qval < 1E-05)

Base call quality data from DBCLS SRA