SRX160829
GSM970265: IgG ChIPSeq Undifferentiated; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Undifferentiated mouse ES cells
cell type
mouse ES cells
passage
29
strain
E14 [129P2/OlaHsd]
chip antibody
IgG (Santa Cruz Biotechnology, Sc-2027)

Sequenced DNA Library

library_name
GSM970265: IgG_ChIPSeq_Undifferentiated
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
14134812
Reads aligned (%)
80.5
Duplicates removed (%)
14.7
Number of peaks
619 (qval < 1E-05)

mm9

Number of total reads
14134812
Reads aligned (%)
80.3
Duplicates removed (%)
15.0
Number of peaks
679 (qval < 1E-05)

Base call quality data from DBCLS SRA