SRX160773
GSM969835: UtxKO H3K4me3; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
ESCs
cell type
ESCs
genotype
UtxKO
chip antibody
H3K4 trimethyl (Millipore 07-473)
treatment
untreated

Sequenced DNA Library

library_name
GSM969835: UtxKO H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
10822236
Reads aligned (%)
98.2
Duplicates removed (%)
13.4
Number of peaks
23597 (qval < 1E-05)

mm9

Number of total reads
10822236
Reads aligned (%)
98.0
Duplicates removed (%)
13.6
Number of peaks
24269 (qval < 1E-05)

Base call quality data from DBCLS SRA