SRX160768
GSM969830: UtxKO + RA H3K4me3 ; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
RA-treated ESCs
cell type
ESCs
genotype
UtxKO
chip antibody
H3K4 trimethyl (Millipore 07-473)
treatment
RA for 48 hours

Sequenced DNA Library

library_name
GSM969830: UtxKO + RA H3K4me3 
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
12503041
Reads aligned (%)
97.9
Duplicates removed (%)
14.6
Number of peaks
23877 (qval < 1E-05)

mm9

Number of total reads
12503041
Reads aligned (%)
97.7
Duplicates removed (%)
14.7
Number of peaks
23852 (qval < 1E-05)

Base call quality data from DBCLS SRA