SRX160765
GSM969827: UtxFlx + RA WCE; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
RA-treated ESCs
cell type
ESCs
genotype
UtxFlx
treatment
RA for 48 hours

Sequenced DNA Library

library_name
GSM969827: UtxFlx + RA WCE
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
13842391
Reads aligned (%)
97.8
Duplicates removed (%)
9.2
Number of peaks
389 (qval < 1E-05)

mm9

Number of total reads
13842391
Reads aligned (%)
97.6
Duplicates removed (%)
9.4
Number of peaks
431 (qval < 1E-05)

Base call quality data from DBCLS SRA