SRX160740
GSM969571: H3K27me3 ChIPSeq LNCaP; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
prostate cancer cells
cell line
LNCaP prostate cancer cells
genotype/variation
androgen-dependent prostate cancer cells
passages
22-24
chip antibody
anti-H3K27me3 (Millipore (07-449))

Sequenced DNA Library

library_name
GSM969571: H3K27me3_ChIPSeq_LNCaP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
104056441
Reads aligned (%)
98.3
Duplicates removed (%)
42.8
Number of peaks
7018 (qval < 1E-05)

hg19

Number of total reads
104056441
Reads aligned (%)
97.8
Duplicates removed (%)
43.7
Number of peaks
7095 (qval < 1E-05)

Base call quality data from DBCLS SRA