SRX160737
GSM969568: H3K4me2 ChIPSeq abl; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
prostate cancer cells
cell line
LNCaP-abl (abl) prostate cancer cells
genotype/variation
androgen-independent prostate cancer cells
passages
61-64
chip antibody
anti-H3K4me2 (Millipore (07-030))

Sequenced DNA Library

library_name
GSM969568: H3K4me2_ChIPSeq_abl
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
13577392
Reads aligned (%)
93.1
Duplicates removed (%)
18.5
Number of peaks
66578 (qval < 1E-05)

hg19

Number of total reads
13577392
Reads aligned (%)
92.9
Duplicates removed (%)
18.7
Number of peaks
66345 (qval < 1E-05)

Base call quality data from DBCLS SRA