SRX160501
GSM968716: H3K79me2 in progenitor motor neurons [ChIP-seq]; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K79me2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
progenitor motor neurons
cell line
HBG3
cell-treatment
+RA +Hh
cell-stage
progenitor motor neurons (Day 4)
chip-antibody
anti-H3K79me2 antibody (Abcam ab3594)

Sequenced DNA Library

library_name
GSM968716: H3K79me2 in progenitor motor neurons [ChIP-seq]
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
21627096
Reads aligned (%)
48.8
Duplicates removed (%)
10.6
Number of peaks
5716 (qval < 1E-05)

mm9

Number of total reads
21627096
Reads aligned (%)
48.6
Duplicates removed (%)
10.7
Number of peaks
5721 (qval < 1E-05)

Base call quality data from DBCLS SRA