SRX160496
GSM968711: H3K27me3 in Day5 cells exposed to Dox(iCdx2) and FGF [ChIP-Seq]; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESCs, differentiated
NA
NA

Attributes by original data submitter

Sample

source_name
Day 5 cells
cell-line
Ainv15 (ATCC SCRC-1029) with Dox-inducible Cdx2-V5 construct
cell-treatment
+Dox +FGF
cell-stage
Day 5
chip-antibody
anti-H3K27me3 (Abcam, ab6002)

Sequenced DNA Library

library_name
GSM968711: H3K27me3 in Day5 cells exposed to Dox(iCdx2) and FGF [ChIP-Seq]
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
35258506
Reads aligned (%)
78.1
Duplicates removed (%)
94.8
Number of peaks
521 (qval < 1E-05)

mm9

Number of total reads
35258506
Reads aligned (%)
77.0
Duplicates removed (%)
95.0
Number of peaks
552 (qval < 1E-05)

Base call quality data from DBCLS SRA