Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
progenitor motor neurons (Day 4)
cell-line
Ainv15 (ATCC SCRC-1029) with Dox-inducible Cdx2-V5 construct
cell-treatment
+RA +Hh +Dox
cell-stage
progenitor motor neurons (Day 4)
chip-antibody
anti-V5 (Abcam, ab15828)

Sequenced DNA Library

library_name
GSM968710: induced V5-tagged Cdx2 (iCdx2-V5) in RA/Hh-derived progenitor motor neurons (Day4) exposed to Dox but not FGF [ChIP-Seq]
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
21124928
Reads aligned (%)
44.9
Duplicates removed (%)
79.3
Number of peaks
1591 (qval < 1E-05)

mm9

Number of total reads
21124928
Reads aligned (%)
44.9
Duplicates removed (%)
79.6
Number of peaks
1593 (qval < 1E-05)

Base call quality data from DBCLS SRA