SRX160483
GSM968689: Chd1 WT N-ChIP-seq 2.5' MNase (WT Chd1 FLAG 20120606 2); Saccharomyces cerevisiae; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CHD1

Cell type

Cell type Class
Yeast strain
Cell type
W303
NA
NA

Attributes by original data submitter

Sample

source_name
Chd1 WT N-ChIP-seq
sample type
nuclei
chip antibody
FLAG (Sigma anti-FLAG M2 magnetic beads, catalog #8823, lot #041M6135)
strain
W1588-4C (congenic to W303-1A except RAD5+)
genotype
Chd1 WT

Sequenced DNA Library

library_name
GSM968689: Chd1 WT N-ChIP-seq 2.5' MNase (WT Chd1 FLAG 20120606 2)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

sacCer3

Number of total reads
49563110
Reads aligned (%)
79.2
Duplicates removed (%)
36.5
Number of peaks
0 (qval < 1E-05)

Base call quality data from DBCLS SRA