SRX160416
GSM967658: CTCF; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ctcf

Cell type

Cell type Class
Placenta
Cell type
Trophoblast stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
F1 C/B trophoblast stem cells
antibody
CTCF (Pugacheva et. al. 2005 Hum Mol Genet 14, 953-965)
cell type
F1 C/B trophoblast stem cells
data type
ChIP-Seq
parent of origin
CAST/EiJ mother X C57BL/6J father
tsc passage number
10-15
total obtained reads
89942473

Sequenced DNA Library

library_name
GSM967658: CTCF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
89942473
Reads aligned (%)
97.3
Duplicates removed (%)
17.4
Number of peaks
42345 (qval < 1E-05)

mm9

Number of total reads
89942473
Reads aligned (%)
97.1
Duplicates removed (%)
17.4
Number of peaks
42384 (qval < 1E-05)

Base call quality data from DBCLS SRA