SRX160412
GSM967654: H3K27ac; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Placenta
Cell type
Trophoblast stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
F1 C/B trophoblast stem cells
antibody
H3K27ac (Abcam 4729)
cell type
F1 C/B trophoblast stem cells
data type
ChIP-Seq
parent of origin
CAST/EiJ mother X C57BL/6J father
tsc passage number
10-15
total obtained reads
93997619

Sequenced DNA Library

library_name
GSM967654: H3K27ac
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
93997619
Reads aligned (%)
96.0
Duplicates removed (%)
17.9
Number of peaks
57013 (qval < 1E-05)

mm9

Number of total reads
93997619
Reads aligned (%)
95.9
Duplicates removed (%)
17.9
Number of peaks
57013 (qval < 1E-05)

Base call quality data from DBCLS SRA