SRX160409
GSM967651: H3K27me3, B/C; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Placenta
Cell type
Trophoblast stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
F1 B/C trophoblast stem cells
antibody
H3K27me3, B/C (Abcam ab6002)
cell type
F1 B/C trophoblast stem cells
data type
ChIP-Seq
parent of origin
C57BL/6J mother X CAST/EiJ father
tsc passage number
10-15
total obtained reads
54861731

Sequenced DNA Library

library_name
GSM967651: H3K27me3, B/C
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
54861731
Reads aligned (%)
97.3
Duplicates removed (%)
7.0
Number of peaks
2619 (qval < 1E-05)

mm9

Number of total reads
54861731
Reads aligned (%)
97.2
Duplicates removed (%)
7.1
Number of peaks
2667 (qval < 1E-05)

Base call quality data from DBCLS SRA