SRX1598421
GSM2070601: Lsd1 ChIPSeq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Placenta
Cell type
Trophoblast stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
Trophoblast stem cells
cell type
trophoblast stem cells
developmental stage
E3.5
passage
15-20
antibody
20752

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. NEBNextUltra library preparation kit without size selection

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
92801297
Reads aligned (%)
89.1
Duplicates removed (%)
18.0
Number of peaks
1032 (qval < 1E-05)

mm9

Number of total reads
92801297
Reads aligned (%)
89.0
Duplicates removed (%)
18.7
Number of peaks
1037 (qval < 1E-05)

Base call quality data from DBCLS SRA