Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Bisulfite-Seq
Antigen
Bisulfite-Seq

Cell type

Cell type Class
Spleen
Cell type
Spleen
MeSH Description
An encapsulated lymphatic organ through which venous blood filters.

Attributes by original data submitter

Sample

source_name
spleen
background strain
N/FVB
sample type
tumor PTCL
genotype/variation
Dnm3a-mutant

Sequenced DNA Library

library_strategy
Bisulfite-Seq
library_source
GENOMIC
library_selection
RANDOM
library_construction_protocol
gDNA and RNA were isolated from splenic FACS sorted splenic B-1a and CD8+ cells using standard methods. Library generation for WGBS, RRBS, and RNAseq were performed using standard methods

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
363548192
Reads aligned (%)
90.5
Coverage rate (×)
7.4
Number of hyper MRs
326250 (qval < 1E-05)

mm9

Number of total reads
363548192
Reads aligned (%)
91.0
Coverage rate (×)
7.4
Number of hyper MRs
326182 (qval < 1E-05)

Base call quality data from DBCLS SRA