Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NCOR1

Cell type

Cell type Class
Digestive tract
Cell type
LS-180
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
LS180_NCoR_125
cell line
LS180 cells
passage number
12-26
cell type
cultured CRC cells
antibody
NCoR (Santa Cruz, C-20, sc-1609)

Sequenced DNA Library

library_name
GSM959632: LS180_NCoR_125
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
37116186
Reads aligned (%)
11.0
Duplicates removed (%)
83.2
Number of peaks
1249 (qval < 1E-05)

hg38

Number of total reads
37116186
Reads aligned (%)
12.0
Duplicates removed (%)
81.8
Number of peaks
1168 (qval < 1E-05)

Base call quality data from DBCLS SRA