SRX159193
GSM959632: LS180 NCoR 125; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NCOR1

Cell type

Cell type Class
Digestive tract
Cell type
LS-180
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
LS180_NCoR_125
cell line
LS180 cells
passage number
12-26
cell type
cultured CRC cells
antibody
NCoR (Santa Cruz, C-20, sc-1609)

Sequenced DNA Library

library_name
GSM959632: LS180_NCoR_125
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
37116186
Reads aligned (%)
65.8
Duplicates removed (%)
81.8
Number of peaks
1168 (qval < 1E-05)

hg19

Number of total reads
37116186
Reads aligned (%)
65.2
Duplicates removed (%)
83.2
Number of peaks
1249 (qval < 1E-05)

Base call quality data from DBCLS SRA