Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NCOR1

Cell type

Cell type Class
Digestive tract
Cell type
LS-180
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
LS180_NCoR_Veh
cell line
LS180 cells
passage number
12-25
cell type
cultured CRC cells
antibody
NCoR (Santa Cruz, C-20, sc-1609)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
44043860
Reads aligned (%)
9.6
Duplicates removed (%)
85.1
Number of peaks
1310 (qval < 1E-05)

hg38

Number of total reads
44043860
Reads aligned (%)
10.6
Duplicates removed (%)
83.7
Number of peaks
1253 (qval < 1E-05)

Base call quality data from DBCLS SRA