SRX159192
GSM959631: LS180 NCoR Veh; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NCOR1

Cell type

Cell type Class
Digestive tract
Cell type
LS-180
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
LS180_NCoR_Veh
cell line
LS180 cells
passage number
12-25
cell type
cultured CRC cells
antibody
NCoR (Santa Cruz, C-20, sc-1609)

Sequenced DNA Library

library_name
GSM959631: LS180_NCoR_Veh
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
44043860
Reads aligned (%)
65.0
Duplicates removed (%)
83.7
Number of peaks
1253 (qval < 1E-05)

hg19

Number of total reads
44043860
Reads aligned (%)
64.4
Duplicates removed (%)
85.1
Number of peaks
1310 (qval < 1E-05)

Base call quality data from DBCLS SRA