SRX159190
GSM959629: LS180 MED1 Veh; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MED1

Cell type

Cell type Class
Digestive tract
Cell type
LS-180
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
LS180_MED1_Veh
cell line
LS180 cells
passage number
12-23
cell type
cultured CRC cells
antibody
MED1 (Santa Cruz, M-255, sc-8998)

Sequenced DNA Library

library_name
GSM959629: LS180_MED1_Veh
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
35065767
Reads aligned (%)
64.1
Duplicates removed (%)
78.7
Number of peaks
560 (qval < 1E-05)

hg38

Number of total reads
35065767
Reads aligned (%)
64.8
Duplicates removed (%)
77.0
Number of peaks
530 (qval < 1E-05)

Base call quality data from DBCLS SRA