SRX159188
GSM959627: LS180 CBP Veh; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CREBBP

Cell type

Cell type Class
Digestive tract
Cell type
LS-180
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
LS180_CBP_Veh
cell line
LS180 cells
passage number
12-21
cell type
cultured CRC cells
antibody
CBP (Santa Cruz, A-22, sc-3996)

Sequenced DNA Library

library_name
GSM959627: LS180_CBP_Veh
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
36163743
Reads aligned (%)
67.2
Duplicates removed (%)
75.6
Number of peaks
901 (qval < 1E-05)

hg19

Number of total reads
36163743
Reads aligned (%)
66.5
Duplicates removed (%)
77.1
Number of peaks
1030 (qval < 1E-05)

Base call quality data from DBCLS SRA