SRX159137
GSM959055: ChIP-seq ZFP143 Fibro; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Zfp143

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
Mouse embryonic fibroblast cell line
cell line
MEF-like
chip antibody
ZNF143, rabbit polyclonal raised against a C-terminal epitope of ZNF143 (Myslinski et al JBC 2006)

Sequenced DNA Library

library_name
GSM959055: ChIP-seq_ZFP143_Fibro
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
36890250
Reads aligned (%)
72.8
Duplicates removed (%)
24.6
Number of peaks
2768 (qval < 1E-05)

mm9

Number of total reads
36890250
Reads aligned (%)
72.7
Duplicates removed (%)
24.7
Number of peaks
2794 (qval < 1E-05)

Base call quality data from DBCLS SRA