SRX159131
GSM959049: ChIP-seq ZNF143 HPB-ALL; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ZNF143

Cell type

Cell type Class
Blood
Cell type
HPB-ALL
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
T-cell acute lymphoblastic leukemia cells
cell line
HPB-ALL
chip antibody
ZNF143, rabbit polyclonal raised against a C-terminal epitope of ZNF143 (Myslinski et al JBC 2006)

Sequenced DNA Library

library_name
GSM959049: ChIP-seq_ZNF143_HPB-ALL
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
30950890
Reads aligned (%)
99.0
Duplicates removed (%)
16.3
Number of peaks
2390 (qval < 1E-05)

hg19

Number of total reads
30950890
Reads aligned (%)
98.2
Duplicates removed (%)
17.9
Number of peaks
2532 (qval < 1E-05)

Base call quality data from DBCLS SRA