SRX159129
GSM959047: ChIP-seq ZNF143 K562; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ZNF143

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
chronic myelogenous leukemia cells
cell line
K562
chip antibody
ZNF143, rabbit polyclonal raised against a C-terminal epitope of ZNF143 (Myslinski et al JBC 2006)

Sequenced DNA Library

library_name
GSM959047: ChIP-seq_ZNF143_K562
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
31759181
Reads aligned (%)
54.3
Duplicates removed (%)
44.8
Number of peaks
3294 (qval < 1E-05)

hg38

Number of total reads
31759181
Reads aligned (%)
55.3
Duplicates removed (%)
44.0
Number of peaks
3261 (qval < 1E-05)

Base call quality data from DBCLS SRA