SRX159088
GSM958507: H2A.Z hES ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2A.Z

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H2A.Z_hES_ChIPSeq
cell type
H1 human embryonic stem cells
passage
passage 30-40
chip antibody
H2A.Z (Millipore 07-594)

Sequenced DNA Library

library_name
GSM958507: H2A.Z_hES_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
29072692
Reads aligned (%)
97.6
Duplicates removed (%)
7.3
Number of peaks
630 (qval < 1E-05)

hg19

Number of total reads
29072692
Reads aligned (%)
97.1
Duplicates removed (%)
8.2
Number of peaks
782 (qval < 1E-05)

Base call quality data from DBCLS SRA