SRX159086
GSM958505: H2AZ mNP ChIPSeq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2A.Z

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
H2AZ_mNP_ChIPSeq
cell type
ES-derived neural progenitor cells
passage
passage 8-12
chip antibody
H2A.Z (Millipore 07-594)
strain
129SVJae x C57BL6

Sequenced DNA Library

library_name
GSM958505: H2AZ_mNP_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
11677910
Reads aligned (%)
97.5
Duplicates removed (%)
8.1
Number of peaks
9825 (qval < 1E-05)

mm9

Number of total reads
11677910
Reads aligned (%)
97.3
Duplicates removed (%)
8.2
Number of peaks
9735 (qval < 1E-05)

Base call quality data from DBCLS SRA