SRX159082
GSM958501: H2AZ mES ChIPSeq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2A.Z

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
H2AZ_mES_ChIPSeq
cell type
Pluripotent embryonic stem cells
passage
passage 5-10
chip antibody
H2A.Z (Millipore 07-594)
strain
129SVJae x C57BL6

Sequenced DNA Library

library_name
GSM958501: H2AZ_mES_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
7701064
Reads aligned (%)
95.9
Duplicates removed (%)
4.7
Number of peaks
730 (qval < 1E-05)

mm9

Number of total reads
7701064
Reads aligned (%)
95.8
Duplicates removed (%)
4.9
Number of peaks
740 (qval < 1E-05)

Base call quality data from DBCLS SRA