Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
LTED cells
NA
NA

Attributes by original data submitter

Sample

source_name
LTED breast cancer cells, Tamoxifen resistant
cell line
LTEDT
chip antibody
ERα antibody (HC-20) (Santa Cruz, catalog# sc-543)
passage
<10

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
22464275
Reads aligned (%)
88.6
Duplicates removed (%)
10.1
Number of peaks
1395 (qval < 1E-05)

hg38

Number of total reads
22464275
Reads aligned (%)
90.3
Duplicates removed (%)
8.9
Number of peaks
1292 (qval < 1E-05)

Base call quality data from DBCLS SRA