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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ESR1
wikigenes
PDBj
CellType: LTED cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX1585245
GSM2061659: ERalpha ChIP-seq LTED Tamoxifen resistant cells; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
ESR1
Cell type
Cell type Class
Breast
Cell type
LTED cells
NA
NA
Attributes by original data submitter
Sample
source_name
LTED breast cancer cells, Tamoxifen resistant
cell line
LTEDT
chip antibody
ERα antibody (HC-20) (Santa Cruz, catalog# sc-543)
passage
<10
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. NEB ultra kit
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
22464275
Reads aligned (%)
99.1
Duplicates removed (%)
8.9
Number of peaks
1292 (qval < 1E-05)
hg19
Number of total reads
22464275
Reads aligned (%)
98.5
Duplicates removed (%)
10.1
Number of peaks
1395 (qval < 1E-05)
Base call quality data from
DBCLS SRA