SRX157785
GSM956689: FOXK1 G22 ChIP-seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXK1

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa
cell line
HeLa
cell type
epithelial
chip antibody
FOXK1
vendor
Santa Cruz

Sequenced DNA Library

library_name
GSM956689: FOXK1 G22 ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
61463382
Reads aligned (%)
96.6
Duplicates removed (%)
9.0
Number of peaks
1906 (qval < 1E-05)

hg19

Number of total reads
61463382
Reads aligned (%)
96.0
Duplicates removed (%)
10.0
Number of peaks
1727 (qval < 1E-05)

Base call quality data from DBCLS SRA