SRX157782
GSM956687: MG3 hiPSM2 H3K4me3 rep2 ChipSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
hiPSC_M23F, H3K4me3 ChIP
cell type
human induced pluripotent stem cells (hiPSCs)
cell line/clone
M23F
chip antibody
H3K4me3
antibody vendor
Abcam
antibody catalog number
AB8580

Sequenced DNA Library

library_name
GSM956687: MG3_hiPSM2_H3K4me3_rep2_ChipSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
27491848
Reads aligned (%)
77.9
Duplicates removed (%)
4.4
Number of peaks
38921 (qval < 1E-05)

hg19

Number of total reads
27491848
Reads aligned (%)
77.6
Duplicates removed (%)
4.7
Number of peaks
38913 (qval < 1E-05)

Base call quality data from DBCLS SRA