SRX157628
Reference Epigenome: ChIP-Seq Analysis of H3K27me3 in Neural Progenitor Cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
James Thomson Laboratory
BIOMATERIAL_TYPE
Cell Line
LINE
H1
LINEAGE
Embryonic Stem Cell
DIFFERENTIATION_STAGE
Embryonic stem cell differentiated into neural progenitor cells
DIFFERENTIATION_METHOD
Publication in progress
PASSAGE
30
MEDIUM
Publication in progress
SEX
Male
BATCH
NPC-7
sample_term_id
CL_0000047

Sequenced DNA Library

library_name
AK409
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
27524287
Reads aligned (%)
97.3
Duplicates removed (%)
17.1
Number of peaks
1356 (qval < 1E-05)

hg19

Number of total reads
27524287
Reads aligned (%)
96.2
Duplicates removed (%)
19.2
Number of peaks
1330 (qval < 1E-05)

Base call quality data from DBCLS SRA