SRX157623
Reference Epigenome: ChIP-Seq Analysis of H2BK5ac in Neural Progenitor Cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
James Thomson Laboratory
BIOMATERIAL_TYPE
Cell Line
LINE
H1
LINEAGE
Embryonic Stem Cell
DIFFERENTIATION_STAGE
Embryonic stem cell differentiated into neural progenitor cells
DIFFERENTIATION_METHOD
Publication in progress
PASSAGE
30
MEDIUM
Publication in progress
SEX
Male
BATCH
NPC-7
sample_term_id
CL_0000047

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
47943462
Reads aligned (%)
87.6
Duplicates removed (%)
21.8
Number of peaks
1018 (qval < 1E-05)

hg19

Number of total reads
47943462
Reads aligned (%)
87.1
Duplicates removed (%)
22.5
Number of peaks
1228 (qval < 1E-05)

Base call quality data from DBCLS SRA