SRX157614
GSM955984: H3K4me3 hypoxia ChIP-seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
H3K4me3 hypoxia ChIP-seq
cell type
HUVEC
chip antibody
H3K4me3 [kindly provided by Dr Kimura CMA304 (Cell Struct Funct. 2008;33(1):61-73)]
passage
within 6 times

Sequenced DNA Library

library_name
GSM955984: H3K4me3 hypoxia ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
8986711
Reads aligned (%)
96.8
Duplicates removed (%)
6.6
Number of peaks
19396 (qval < 1E-05)

hg19

Number of total reads
8986711
Reads aligned (%)
96.1
Duplicates removed (%)
7.4
Number of peaks
19489 (qval < 1E-05)

Base call quality data from DBCLS SRA