Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RAD21

Cell type

Cell type Class
Neural
Cell type
RPE
NA
NA

Attributes by original data submitter

Sample

source_name
ChIPseq_RPE_Rad21
antibody
Rad21 (PMID: 26051894)
treatment
NT
cell line/type
RPE

Sequenced DNA Library

library_name
GSM6244264
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin immunoprecipitation was performed as previously described (Komata, M., et al., Chromatin immunoprecipitation protocol for mammalian cells. Methods Mol Biol, 2014. 1164: p. 33-8.). ChIP-seq libraries were prepared using NEBNext ChIP-seq Library Prep Master Mix Set for Illumina (New England BioLabs).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
60226753
Reads aligned (%)
99.3
Duplicates removed (%)
6.3
Number of peaks
20626 (qval < 1E-05)

hg19

Number of total reads
60226753
Reads aligned (%)
98.9
Duplicates removed (%)
7.1
Number of peaks
20522 (qval < 1E-05)

Base call quality data from DBCLS SRA