Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RAD21

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
ChIPseq_293T_Rad21
antibody
Rad21 (PMID: 26051894)
treatment
NT
cell line/type
293T

Sequenced DNA Library

library_name
GSM6244232
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin immunoprecipitation was performed as previously described (Komata, M., et al., Chromatin immunoprecipitation protocol for mammalian cells. Methods Mol Biol, 2014. 1164: p. 33-8.). ChIP-seq libraries were prepared using NEBNext ChIP-seq Library Prep Master Mix Set for Illumina (New England BioLabs).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
42196241
Reads aligned (%)
99.5
Duplicates removed (%)
4.7
Number of peaks
24456 (qval < 1E-05)

hg19

Number of total reads
42196241
Reads aligned (%)
99.0
Duplicates removed (%)
5.8
Number of peaks
24350 (qval < 1E-05)

Base call quality data from DBCLS SRA