Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Sap130

Cell type

Cell type Class
Embryo
Cell type
Embryonic heart
NA
NA

Attributes by original data submitter

Sample

source_name
Mouse heart
Stage
E12.5
tissue
Heart
strain
C57BL/6
chip antibody
Sap130 (A302-491A: Bethyl laboratories)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin immunoprecipitation of Sap130 was performed with rabbit anti-Sap130 antibody (A302-491A: Bethyl laboratories, 2ug) and iDeal ChIP-seq Kit for Transcription Factors (Diagenode) following the manufacturer's protocol ChIP-seq libraries were generated using NEBNext Ultra DNA Library Prep Kit for Illumina (NEB) following the manufacturer's protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

mm10

Number of total reads
56251060
Reads aligned (%)
99.2
Duplicates removed (%)
41.8
Number of peaks
15167 (qval < 1E-05)

mm9

Number of total reads
56251060
Reads aligned (%)
99.1
Duplicates removed (%)
41.8
Number of peaks
15164 (qval < 1E-05)

Base call quality data from DBCLS SRA