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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Tcf3
wikigenes
PDBj
CellType: B cells
ATCC
MeSH
RIKEN BRC
SRX1568859
GSM2058431: E2A ChIP-Seq DSG + HCHO Act B cell 22327; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Tcf3
Cell type
Cell type Class
Blood
Cell type
B cells
NA
NA
Attributes by original data submitter
Sample
source_name
Act B cell
strain
C57BL/6
genotype
Tcf3,4(fl/fl)
cell preparation
2-day LPS stimulation whole population
cell sorting strategy
whole population
chip antibody
Tcf3
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
phenol-chloroform extraction
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
52193448
Reads aligned (%)
98.4
Duplicates removed (%)
16.2
Number of peaks
23304 (qval < 1E-05)
mm9
Number of total reads
52193448
Reads aligned (%)
98.2
Duplicates removed (%)
16.2
Number of peaks
23283 (qval < 1E-05)
Base call quality data from
DBCLS SRA