Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Digestive tract
Cell type
Colorectal cancer
NA
NA

Attributes by original data submitter

Sample

source_name
primary CRC tumor tissue
tissue
primary colorectal cancer tumor
chip antibody
rabbit anti-H3K4me1 (Abcam #8895)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
36226397
Reads aligned (%)
97.6
Duplicates removed (%)
2.2
Number of peaks
3113 (qval < 1E-05)

hg19

Number of total reads
36226397
Reads aligned (%)
96.9
Duplicates removed (%)
3.3
Number of peaks
3026 (qval < 1E-05)

Base call quality data from DBCLS SRA