SRX1564685
E11.5 spinal cord progenitor DNase-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Embryo
Cell type
Neural tube
NA
NA

Attributes by original data submitter

Sample

strain
CD1
dev_stage
E11.5
sex
pooled male and female
tissue
spinal cord progenitors

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
252029590
Reads aligned (%)
95.8
Duplicates removed (%)
70.3
Number of peaks
30848 (qval < 1E-05)

mm9

Number of total reads
252029590
Reads aligned (%)
95.6
Duplicates removed (%)
70.4
Number of peaks
30944 (qval < 1E-05)

Base call quality data from DBCLS SRA