SRX1564542
E11.5 spinal cord progenitor Sox2 ChIP-seq 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Embryo
Cell type
Neural tube
NA
NA

Attributes by original data submitter

Sample

strain
CD1
dev_stage
E11.5
sex
pooled male and female
tissue
spinal cord progenitors

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
21597402
Reads aligned (%)
78.7
Duplicates removed (%)
36.9
Number of peaks
1471 (qval < 1E-05)

mm9

Number of total reads
21597402
Reads aligned (%)
78.6
Duplicates removed (%)
37.0
Number of peaks
1455 (qval < 1E-05)

Base call quality data from DBCLS SRA