SRX155906
GSM952036: HeLa S3 DNase-seq; Homo sapiens; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Human cell Line
tissue
cervix
cell type
adenocarcinoma
cell line
HeLa S3 cells
morphology
epithelial

Sequenced DNA Library

library_name
GSM952036: HeLa S3 DNase-seq
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
14494664
Reads aligned (%)
98.2
Duplicates removed (%)
3.7
Number of peaks
15037 (qval < 1E-05)

hg19

Number of total reads
14494664
Reads aligned (%)
97.7
Duplicates removed (%)
4.1
Number of peaks
15027 (qval < 1E-05)

Base call quality data from DBCLS SRA