SRX155776
GSM951910: colon-Tumor-2 HSF1 ChIPSeq 2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HSF1

Cell type

Cell type Class
Digestive tract
Cell type
Colon cancer
NA
NA

Attributes by original data submitter

Sample

source_name
patient colon tumor
cell type
Patient Tumor
antibody
HSF1 (H-311, Santa Cruz, sc-9144, Lot# J0510)
tumorigenic or nontumorigenic
Tumorigenic

Sequenced DNA Library

library_name
GSM951910: colon-Tumor-2_HSF1_ChIPSeq_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
26985552
Reads aligned (%)
80.4
Duplicates removed (%)
75.3
Number of peaks
179 (qval < 1E-05)

hg19

Number of total reads
26985552
Reads aligned (%)
79.6
Duplicates removed (%)
77.7
Number of peaks
668 (qval < 1E-05)

Base call quality data from DBCLS SRA