Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HSF1

Cell type

Cell type Class
Breast
Cell type
Breast cancer cells
NA
NA

Attributes by original data submitter

Sample

source_name
patient breast tumor
cell type
Patient Tumor
antibody
HSF1 (H-311, Santa Cruz, sc-9144, Lot# J0510)
tumorigenic or nontumorigenic
Tumorigenic

Sequenced DNA Library

library_name
GSM951900: Breast-Tumor-1_HSF1_ChIPSeq_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
30723558
Reads aligned (%)
51.7
Duplicates removed (%)
45.5
Number of peaks
1063 (qval < 1E-05)

hg38

Number of total reads
30723558
Reads aligned (%)
54.0
Duplicates removed (%)
43.6
Number of peaks
816 (qval < 1E-05)

Base call quality data from DBCLS SRA