SRX155757
GSM951891: NCIH838 HSF1 ChIPSeq 1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HSF1

Cell type

Cell type Class
Lung
Cell type
NCI-H838
Primary Tissue
Lung
Site of Extraction
Lymph Node
Tissue Diagnosis
Carcinoma Non-Small Cell

Attributes by original data submitter

Sample

source_name
NCIH838 cells
cell type
lung cancer cell line
antibody
HSF1 (H-311, Santa Cruz, sc-9144, Lot# J0510)
tumorigenic or nontumorigenic
Tumorigenic

Sequenced DNA Library

library_name
GSM951891: NCIH838_HSF1_ChIPSeq_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
33944924
Reads aligned (%)
83.7
Duplicates removed (%)
35.2
Number of peaks
1675 (qval < 1E-05)

hg38

Number of total reads
33944924
Reads aligned (%)
84.4
Duplicates removed (%)
33.9
Number of peaks
1635 (qval < 1E-05)

Base call quality data from DBCLS SRA