SRX155742
GSM951876: HCT15 HSF1 ChIPSeq 1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HSF1

Cell type

Cell type Class
Digestive tract
Cell type
HCT-15
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HCT15 cells
cell type
colon cancer cell line
antibody
HSF1 (H-311, Santa Cruz, sc-9144, Lot# J0510)
tumorigenic or nontumorigenic
Tumorigenic

Sequenced DNA Library

library_name
GSM951876: HCT15_HSF1_ChIPSeq_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
29559633
Reads aligned (%)
91.3
Duplicates removed (%)
56.9
Number of peaks
600 (qval < 1E-05)

hg19

Number of total reads
29559633
Reads aligned (%)
90.6
Duplicates removed (%)
58.4
Number of peaks
811 (qval < 1E-05)

Base call quality data from DBCLS SRA