SRX155739
GSM951873: SW620 HSF1 ChIPSeq 1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HSF1

Cell type

Cell type Class
Digestive tract
Cell type
SW 620
Primary Tissue
unresolved
Tissue Diagnosis
unresolved

Attributes by original data submitter

Sample

source_name
SW620 cells
cell type
colon cancer cell line
antibody
HSF1 (H-311, Santa Cruz, sc-9144, Lot# J0510)
tumorigenic or nontumorigenic
Tumorigenic

Sequenced DNA Library

library_name
GSM951873: SW620_HSF1_ChIPSeq_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
24030025
Reads aligned (%)
93.4
Duplicates removed (%)
13.6
Number of peaks
820 (qval < 1E-05)

hg38

Number of total reads
24030025
Reads aligned (%)
94.1
Duplicates removed (%)
12.3
Number of peaks
475 (qval < 1E-05)

Base call quality data from DBCLS SRA