SRX155721
GSM951855: BPE HS HSF1 ChIPSeq 1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HSF1

Cell type

Cell type Class
Breast
Cell type
BPE
NA
NA

Attributes by original data submitter

Sample

source_name
BPE cells
cell type
Immortalized mammary epithelial cells
antibody
HSF1 (H-311, Santa Cruz, sc-9144, Lot# J0510)
tumorigenic or nontumorigenic
Non-tumorigenic

Sequenced DNA Library

library_name
GSM951855: BPE_HS_HSF1_ChIPSeq_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
18489116
Reads aligned (%)
91.7
Duplicates removed (%)
67.5
Number of peaks
325 (qval < 1E-05)

hg19

Number of total reads
18489116
Reads aligned (%)
90.5
Duplicates removed (%)
69.1
Number of peaks
375 (qval < 1E-05)

Base call quality data from DBCLS SRA